This is an list of publications covering 2002-2012. See also the current publications.

Note that this list may not provide open access links for every publications. Feel free to help improve this page, e.g. by adding links to DOI and preprints.

2012

Wolstencroft, K, Owen, S, HorridToward interoperable bioscience datage, M, Jupp, S, Krebs, O, Snoep, J, du Preez, F, Mueller, W, Stevens, R, Goble, C (2012) Stealthy annotation of experimental biology by spreadsheets Concurrency and Computation: Practice and Experience 25:4, pp. 467-480, October 2012 doi:10.1002/cpe.2941

Matthew Gamble, Carole Goble, Graham Klyne, Jun Zhao (2012): MIM: A minimum information model vocabulary and framework for scientific linked data, 2012 IEEE 8th International Conference on E-Science, e-Science 2012. doi:10.1109/eScience.2012.6404489 [preprint]

Belhajjame, K.; Corcho, O.; Garijo, D.; Zhao, J.; Missier, P.; Newman, D.; Palma, R.; Bechhofer, S.; García Cuesta, E.; Gómez-Pérez, J. M.; Soiland-Reyes, S.; Verdes-Montenegro, L.; De Roure, D. & Goble, C. (2012), Workflow-Centric Research Objects: First Class Citizens in Scholarly Discourse, in Proceedings of Workshop on the Semantic Publishing. [preprint]

Jinhui Yao, Wei Tan, Surya Nepal, Shiping Chen, Jia Zhang, David De Roure and Carole Goble (2012): ReputationNet: a Reputation Engine to Enhance ServiceMap by Recommending Trusted Services. Accepted for IEEE SCC2012, June 2012.
[preprint]

Khalid Belhajjame, David De Roure and Carole Goble (2012): Research Object Management: Opportunities and Challenges. Data Intensive Collaboration in Science and Engineering (DISCOSE) workshop, collocated with ACM CSCW 2012 [preprint]

Jun Zhao, Jose Manuel Gomez-Perezy, Khalid Belhajjame, Graham Klyne, Esteban Garcia-Cuestay, Aleix Garridoy, Kristina Hettne, Marco Roos, David De Roure, Carole Goble (2012): Why Workflows Break - Understanding and Combating Decay in Taverna Workflows, eScience 2012, Chicago, October 2012. [preprint]

Harmelen, F.; Kampis, G.; Boerner, K.; Besselaar, P.; Schultes, E.; Goble, C.; Groth, P.; Mons, B.; Anderson, S.; Decker, S.; Hayes, C.; Buecheler, T. & Helbing, D. (2012), Theoretical and technological building blocks for an innovation accelerator, The European Physical Journal Special Topics 214(1), 183-214.

Hettne, K.; Soiland-Reyes, S.; Klyne, G.; Belhajjame, K.; Gamble, M.; Bechhofer, S.; Roos, M. & Corcho, O. (2012), Workflow forever: semantic web semantic models and tools for preserving and digitally publishing computational experiments, in Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, ACM, New York, NY, USA, pp. 36–37.

Jupp, S.; Horridge, M.; Iannone, L.; Klein, J.; Owen, S.; Schanstra, J.; Wolstencroft, K. & Stevens, R. (2012), Populous: a tool for building OWL ontologies from templates, BMC Bioinformatics 13.

Karasavvas, K.; Wolstencroft, K.; Mina, E.; Cruickshank, D.; Williams, A.; De Roure, D.; Goble, C. & Roos, M. (2012), Opening new gateways to workflows for life scientists., Stud Health Technol Inform 175, 131–141.

Klein, J.; Jupp, S.; Moulos, P.; Fernandez, M.; Buffin-Meyer, B.; Casemayou, A.; Chaaya, R.; Charonis, A.; Bascands, J.-L.; Stevens, R. & Schanstra, J. P. (2012), The KUPKB: a novel Web application to access multiomics data on kidney disease, The FASEB Journal 26(5), 2145-53.

Page, K.; Palma, R.; Holubowicz, P.; Klyne, G.; Soiland-Reyes, S.; Cruickshank, D.; Cabero, R. G.; Cuesta, E. G.; Roure, D. D. & Zhao, J. (2012), From workflows to Research Objects: an architecture for preserving the semantics of science, Proceedings of the 2nd International Workshop on Linked Science. [pdf]

Susanna-Assunta Sansone, Philippe Rocca-Serra, Dawn Field, Eamonn Maguire, Chris Taylor, Oliver Hofmann, Hong Fang, Steffen Neumann, Weida Tong, Linda Amaral-Zettler, Kimberly Begley, Tim Booth, Lydie Bougueleret, Gully Burns, Brad Chapman, Tim Clark, Lee-Ann Coleman, Jay Copeland, Sudeshna Das, Antoine de Daruvar, Paula de Matos, Ian Dix, Scott Edmunds, Chris T Evelo, Mark J Forster, Pascale Gaudet, Jack Gilbert, Carole Goble, Julian L Griffin, Daniel Jacob, Jos Kleinjans, Lee Harland, Kenneth Haug, Henning Hermjakob, Shannan J Ho Sui, Alain Laederach, Shaoguang Liang, Stephen Marshall, Annette McGrath, Emily Merrill, Dorothy Reilly, Magali Roux, Caroline E Shamu, Catherine A Shang, Christoph Steinbeck, Anne Trefethen, Bryn Williams-Jones, Katherine Wolstencroft, Ioannis Xenario, Winston Hide (2012): Toward interoperable bioscience data, Nature Genetics 44(2), 121–126. doi:10.1038/ng.1054

Antony J. Williams, Lee Harland, Paul Groth, Stephen Pettifer, Christine Chichester, Egon L. Willighagen, Chris T. Evelo, Niklas Blomberg, Gerhard Ecker, Carole Goble, Barend Mons (2012):
Open PHACTS: semantic interoperability for drug discovery, Drug Discovery Today 17(21-22) pp 1188 - 1198. doi:10.1016/j.drudis.2012.05.016

Zhao, J.; Klyne, G.; Holubowicz, P.; Palma, R.; Soiland-Reyes, S.; Hettne, K.; Ruiz, J. E.; Roos, M.; Page, K. & Gómez-Pérez, J. M. (2012), RO-Manager: A Tool for Creating and Manipulating Research Objects to Support Reproducibility and Reuse in Sciences, Proc. 2nd Intl. Workshop on Linked Science.

Paolo Ciccarese, Marco Ocana and Tim Clark (2012): Open semantic annotation of scientific publications using DOMEO. Journal of Biomedical Semantics 2012, 3(Suppl 1):S1 doi:10.1186/2041-1480-3-S1-S1

2011

Alasdair J. G. Gray, Raul Garcia-Castro, Kostis Kyzirakos, Manos Karpathiotakis, Jean-Paul Calbimonte, Kevin R. Page, Jason Sadler, Alex Frazer, Ixent Galpin, Alvaro A. A. Fernandes, Norman W. Paton, Óscar Corcho, Manolis Koubarakis, David De Roure, Kirk Martinez, Asunción Gómez-Pérez (2011): A Semantically Enabled Service Architecture for Mashups over Streaming and Stored Data. ESWC (2) 2011: 300-314 [preprint]

Belhajjame, K.; Goble, C.; Soiland-Reyes, S. & De Roure, D. (2011), Fostering Scientific Workflow Preservation through Discovery of Substitute Services, in E-Science (e-Science), 2011 IEEE 7th International Conference on, pp. 97-104.

Bentley, R.; Brooke, J.; Csillaghy, A.; Fellows, D.; Le Blanc, A.; Messerotti, M.; Perez-Suarez, D.; Pierantoni, G. & Soldati, M. (2011), HELIO: Discovery and Analysis of Data in Heliophysics, in 2011 IEEE 7th International Conference on E-Science (e-Science), pp. 248-255.

De Roure, D.; Bechhofer, S.; Goble, C. & Newman, D. (2011), Scientific Social Objects: The Social Objects and Multidimensional Network of the myExperiment Website, in Proceeding of: PASSAT/SocialCom 2011, pp. 1398-1402.

Gamble, M. & Goble, C. (2011), Quality, Trust, and Utility of Scientific Data on the Web: Towards a Joint Model, in Proceedings of the ACM WebSci ‘11.

Gaudet, P.; Bairoch, A.; Field, D.; Sansone, S.-A.; Taylor, C.; Attwood, T. K.; Bateman, A.; Blake, J. A.; Bult, C. J.; Cherry, J. M.; Chisholm, R. L.; Cochrane, G.; Cook, C. E.; Eppig, J. T.; Galperin, M. Y.; Gentleman, R.; Goble, C. A.; Gojobori, T.; Hancock, J. M.; Howe, D. G.; Imanishi, T.; Kelso, J.; Landsman, D.; Lewis, S. E.; Mizrachi, I. K.; Orchard, S.; Ouellette, B. F. F.; Ranganathan, S.; Richardson, L.; Rocca-Serra, P.; Schofield, P. N.; Smedley, D.; Southan, C.; Tan, T. W.; Tatusova, T.; Whetzel, P. L.; White, O. & Yamasaki, C. (2011), Towards BioDBcore: a community-defined information specification for biological databases, Nucleic Acids Research 39(suppl 1), D7-D10.

Jupp, S.; Eales, J.; Fischer, S.; Land, S.; Ramgolam, R.; Williams, A. & Stevens, R. (2011), Combining RapidMiner operators with bioinformatics services - a powerful combination, in RapidMiner Community Meeting and Conference, (RCOMM).

Jupp, S.; Klein, J.; Schanstra, J. & Stevens, R. (2011), Developing a kidney and urinary pathway knowledge base, Journal of biomedical semantic 2 Suppl 2:S7.

Missier, P. & Goble, C. (2011), Workflows to open provenance graphs, round-trip, Future Generation Computer Systems 27(6), 812 - 819.

Neudecker, C.; Schlarb, S.; Dogan, Z. M.; Missier, P.; Sufi, S.; Williams, A. & Wolstencroft, K. (2011), An experimental workflow development platform for historical document digitisation and analysis, Association for Computing Machinery, pp. 161.

Wei Tan, Jia Zhang, Ravi Madduri, Ian Foster, David De Roure and Carole Goble (2011) ServiceMap: Providing Map and GPS Assistance to Service Composition in Bioinformatics. IEEE International Conference on Services Computing 2011. [preprint]

Wolstencroft, K.; Owen, S.; du Preez, F.; Krebs, O.; Mueller, W.; Goble, C. & Snoep, J. L. (2011): Chapter twenty-nine - The SEEK: A Platform for Sharing Data and Models in Systems Biology , in Malkhey Verma Daniel Jameson & Hans V. Westerhoff, ed., Methods in Systems Biology, Academic Press, pp. 629 - 655. doi:10.1016/B978-0-12-385118-5.00029-3 [eScholar] [preprint]

Wolstencroft, K.; Owen, S.; Horridge, M.; Krebs, O.; Mueller, W.; Snoep, J. L.; du Preez, F. & Goble, C. (2011), RightField: embedding ontology annotation in spreadsheets, Bioinformatics 27(14), 2021-2022.

Zhao, J.; Sahoo, S.; Missier, P.; Sheth, A. & Goble, C. (2011), Extending Semantic Provenance into the Web of Data, Internet Computing, IEEE 15(1), 40-48.

David De Roure, Khalid Belhajjam, Paolo Missier, José Manuel Gómez-Pérez, Raúl Palma, José Enrique Ruiz, Kristina Hettne, Marco Roos, Graham Klyne, Carole Goble (2011): Towards the Preservation of Scientific Workflows. Accepted for 8th International Conference on Preservation of Digital Objects (iPRES 2011). [pdf]

2010

Swertz, M. A.; Velde, K. J.; Tesson, B. M.; Scheltema, R. A.; Arends, D.; Vera, G.; Alberts, R.; Dijkstra, M.; Schofield, P.; Schughart, K.; Hancock, J. M.; Smedley, D.; Wolstencroft, K.; Goble, C.; de Brock, E. O.; Jones, A. R.; Parkinson, H. E.; members of the Coordination of Mouse Informatics Resources (CASIMIR). Genotype-To-Phenotype GEN2PHEN Consortiums & Jansen, R. C. (2010), XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments, Genome Biology 11.

Bechhofer, S.; Ainsworth, J.; Bhagat, J.; Buchan, I.; Crouch, P.; Cruickshank, D.; Delderfield, M.; Dunlop, I.; Gamble, M.; Goble, C.; Michaelides, D.; Missier, P.; Owen, S.; Newman, D.; De Roure, D. & Sufi, S. (2010), Why Linked Data is Not Enough for Scientists, Sixth IEEE e-Science conference.

Bechhofer, S.; De Roure, D.; Gamble, M.; Goble, C. & Buchan, I. (2010), Research Objects: Towards Exchange and Reuse of Digital Knowledge, The Future of the Web for Collaborative Science.

Bhagat, J.; Tanoh, F.; Nzuobontane, E.; Laurent, T.; Orlowski, J.; Roos, M.; Wolstencroft, K.; Aleksejevs, S.; Stevens, R.; Pettifer, S.; Lopez, R. & Goble, C. (2010), BioCatalogue: a universal catalogue of web services for the life sciences, Nucleic Acids Research.

De Roure, D. & Goble, C. (2010), Anchors in Shifting Sand: the Primacy of Method in the Web of Data, in Web Science Conference.

De Roure, D.; Goble, C.; Aleksejevs, S.; Bechhofer, S.; Bhagat, J.; Cruickshank, D.; Fisher, P.; Hull, D.; Michaelides, D.; Newman, D.; Procter, R.; Lin, Y. & Poschen, M. (2010), Towards open science: the myExperiment approach, Concurrency and Computation: Practice and Experience.

Gamble, M. & Goble, C. (2010), Standing on the shoulders of the trusted web: Trust, Scholarship and Linked Data., in Proceedings of the WebSci10: Extending the Frontiers of Society On-Line.

Goble, C.; Bhagat, J.; Aleksejevs, S.; Cruickshank, D.; Michaelides, D.; Newman, D.; Borkum, M.; Bechhofer, S.; Roos, M.; Li, P. & De Roure, D. (2010), myExperiment: a repository and social network for the sharing of bioinformatics workflows, Nucleic Acids Research.

Jupp, S.; Horridge, M.; Iannone, L.; Klein, J.; Owen, S.; Schanstra, J.; Stevens, R. & Wolstencroft, K. (2010), Populous: A tool for populating ontology templates, CoRR abs/1012.1745.

Katayama, T.; Arakawa, K.; Nakao, M.; Ono, K.; Aoki-Kinoshita, K.; Yamamoto, Y.; Yamaguchi, A.; Kawashima, S.; Chun, H.-W.; Aerts, J.; Aranda, B.; Barboza, L.; Bonnal, R.; Bruskiewich, R.; Bryne, J.; Fernandez, J.; Funahashi, A.; Gordon, P.; Goto, N.; Groscurth, A.; Gutteridge, A.; Holland, R.; Kano, Y.; Kawas, E.; Kerhornou, A.; Kibukawa, E.; Kinjo, A.; Kuhn, M.; Lapp, H.; Lehvaslaiho, H.; Nakamura, H.; Nakamura, Y.; Nishizawa, T.; Nobata, C.; Noguchi, T.; Oinn, T.; Okamoto, S.; Owen, S.; Pafilis, E.; Pocock, M.; Prins, P.; Ranzinger, R.; Reisinger, F.; Salwinski, L.; Schreiber, M.; Senger, M.; Shigemoto, Y.; Standley, D.; Sugawara, H.; Tashiro, T.; Trelles, O.; Vos, R.; Wilkinson, M.; York, W.; Zmasek, C.; Asai, K. & Takagi, T. (2010), The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows., Journal of Biomedical Semantics 1(1), 8.

Li, P.; Dada, J.; Jameson, D.; Spasic, I.; Swainston, N.; Carroll, K.; Dunn, W.; Khan, F.; Malys, N.; Messiha, H.; Simeonidis, E.; Weichart, D.; Winder, C.; Wishart, J.; Broomhead, D.; Goble, C.; Gaskell, S.; Kell, D.; Westerhoff, H.; Mendes, P. & Paton, N. (2010), Systematic integration of experimental data and models in systems biology, BMC Bioinformatics 11(1), 582.

Missier, P.; Ludascher, B.; Bowers, S.; Dey, S.; Sarkar, A.; Shrestha, B.; Altintas, I.; Anand, M. & Goble, C. (2010), Linking multiple workflow provenance traces for interoperable collaborative science, in Workflows in Support of Large-Scale Science (WORKS), 2010 5th Workshop on.

Missier, P.; Paton, N. & Belhajjame, K. (2010), Fine-grained and efficient lineage querying of collection-based workflow provenance, in EDBT/ICDT 2010 Joint Conference.

Missier, P.; Sahoo, S.; Zhao, J.; Goble, C. & Sheth, A. (2010), Janus: from Workflows to Semantic Provenance and Linked Open Data, in IPAW-10.

Paolo Missier, Stian Soiland-Reyes, Stuart Owen, Wei Tan, Alexandra Nenadic, Ian Dunlop, Alan Williams, Tom Oinn, Carole Goble (2010) Taverna, Reloaded Scientific and Statistical Database Management: 22nd International Conference, SSDBM 2010, Heidelberg, Germany, June 30–July 2, 2010. Proceedings doi:10.1007/978-3-642-13818-8_33

Missier, P.; Wolstencroft, K.; Tanoh, F.; Li, P.; Bechhofer, S.; Belhajjame, K. & Goble, C. (2010), Functional Units: Abstractions for Web Service Annotations, in IEEE 2010 Fourth International Workshop on Scientific Workflows SWF 2010

Missier, P.; Wolstencroft, K.; Tanoh, F.; Li, P.; Bechhofer, S.; Belhajjame, K.; Pettifer, S. & Goble, C. (2010), Functional Units: Abstractions for Web Service Annotations, in 6th World Congress of Services, pp. 306-313.

Moeller, S.; Krabbenhoeft, H.; Tille, A.; Paleino, D.; Williams, A.; Wolstencroft, K.; Goble, C. & Plessy, C. (2010), Community-driven computational biology with Debian and Taverna, in BOSC 2010.

Pirro, G.; Trunfio, P.; Talia, D.; Missier, P. & Goble, C. (2010), ERGOT: A Semantic-based System for Service Discovery in Distributed Infrastructures, in Proc. of the 10th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing.

Roure, D. & Goble, C. (2010), Supporting e-Science Using Semantic Web Technologies - The Semantic Grid, in Huajun Chen; Yimin Wang & Kei-Hoi Cheung, ed., Semantic e-Science, Springer US, , pp. 1-28.

Swainston, N.; Jameson, D.; Li, P.; Spasic, I.; Mendes, P. & Paton, N. (2010), Integrative Information Management for Systems Biology, in 7th International Conference on Data Integration in the Life Sciences (DILS 2010).

Wei Tan, Ravi Madduri, Alexandra Nenadic, Stian Soiland-Reyes, Dinanath Sulakhe, Ian Foster and Carole A Goble (2010): CaGrid Workflow Toolkit: A Taverna based workflow tool for cancer grid BMC Bioinformatics 11:542. doi:10.1186/1471-2105-11-542

Wei Tan, Paolo Missier, Ian Foster, Ravi Madduri, David De Roure, Carole Goble (2009): A comparison of using Taverna and BPEL in building scientific workflows: the case of caGrid Concurrency and Computation: Practice and Experience *22(9) 1098-1117 doi:10.1002/cpe.1547

2009

Belhajjame, KhaIid, Missier, P. & Goble, C.Cannataro, M., ed., (2009), Data Provenance in Scientific Workflows, Medical Information Science Reference.

De Roure, D. & Goble, C. (2009), Lessons from myExperiment: Research Objects for Data Intensive Research, in eScience Workshop 2009.

De Roure, D. & Goble, C. (2009), Lessons from myExperiment: Two insights into emerging e-Research practice, in UK e-Science All Hands Meeting.

De Roure, D. & Goble, C. (2009), myExperiment: A Web 2.0 Virtual Research Environment for Research using Computation and Services, in Workshop On Integrating Digital Library Content with Computational Tools and Services at JCDL 2009.

De Roure, D. & Goble, C. (2009), Research In a Connected World, chapter Scholarly Communication and the Web.

De Roure, D. & Goble, C. (2009), Software Design for Empowering Scientists, IEEE Software 26(1), 88-95.

De Roure, D.; Goble, C.; Aleksejevs, S.; Bechhofer, S.; Bhagat, J.; Cruickshank, D.; Michaelides, D. & Newman, D. (2009), The myExperiment Open Repository for Scientific Workflows, in Open Repositories 2009.

Fisher, P.; Noyes, H.; Kemp, S.; Stevens, R. & Brass, A. (2009), A systematic strategy for the discovery of candidate genes responsible for phenotypic variation, Methods in molecular biology 573, 329-345.

Gibson, A.; Gamble, M.; Wolstencroft, K.; Oinn, T.; Goble, C.; Belhajjame, K. & Missier, P. (2009), The data playground: An intuitive workflow specification environment, Future Generation Computer Systems 25(4), 453-459.

Goble, C. & De Roure, D. (2009), Data Intensive Computing: The Fourth Paradigm of Scientific Discovery, chapter The impact of workflow tools on data-centric research.

Goble, C.; Missier, P. & De Roure, D. (2009), McGraw-Hill Yearbook of Science & Technology 2009, McGraw-Hill, chapter Scientific Workflows.

Goderis, A.; Fisher, P.; Gibson, A.; Tanoh, F.; Wolstencroft, K.; De Roure, D. & Goble, C. (2009), Benchmarking Workflow Discovery: A Case Study, Bioinformatics. Concurrency: Practice and Experience.

Goderis, A.; Lin, Y.; Poschen, M.; Procter, R.; Goble, C.; De Roure, D.; Flanagan, B.; Sytchev, I. & LeJeune, L. (2009), The Open Scientist: fact or fiction?, in Pacific Symposium on Biocomputing, Open Science Workshop.

Ludascher, B.; Altintas, I.; Bowers, S.; Cummings, J.; Critchlow, T.; Deelman, E.; De Roure, D.; Freire, J.; Goble, C.; Jones, M.; Kasky, S.; McPhillips, T.; Podhorszki, N.; Silva, C.; Taylor, I. & Mladen, V.Shoshani, A. & Rotem, D., ed., (2009), Scientific Data Management: Challenges, Technology, and Deployment, Chapman & Hall/CRC Computational Science, chapter Scientific Process Automation and Workflow Management.

Maheshwari, K.; Missier, P.; Goble, C. & Montagnat, J. (2009), Medical Image Processing Workflow Support on the EGEE Grid with Taverna, in Intl Symposium on Computer Based Medical Systems (CBMS09)**.

Maleki-Dizaji, S.; Rolfe, M.; Fisher, P. & Holcombe, M. (2009), A Systematic Approach to Understanding Bacterial Responses to Oxygen Using Taverna and Webservices, in 13th International Conference on Biomedical Engineering, Springer Berlin Heidelberg, .

Mcdermott, P. & Pettifer, S. (2009), Extending Collaborative Tagging for Use With Scientific Data, in IADIS eSociety Conference Proceedings.

Newman, D.; Bechhofer, S. & De Roure, D. (2009), myExperiment: An ontology for e-Research, in Workshop on Semantic Web Applications in Scientific Discourse in conjunction with the International Semantic Web Conference.

Pettifer, S.; Thorne, D.; McDermott, P.; Attwood, T.; Baran, J.; Bryne, J. C.; Hupponen, T.; Mowbray, D. & Vriend, G. (2009), An active registry for bioinformatics web services., Bioinformatics 25(16), 2090–2091.

Pettifer, S.; Thorne, D.; McDermott, P.; Marsh, J.; Villéger, A.; Kell, D. B. & Attwood, T. K. (2009), Visualising biological data: a semantic approach to tool and database integration., BMC bioinformatics 10 Suppl 6.

Sroka, J.; Hidders, J.; Missier, P. & Goble, C. (2009), A formal semantics for the Taverna 2 workflow model, Journal of Computer and System Sciences 76(6), 490-508.

Wei Tan, Kyle Chard, Dinanath Sulakhe, Ravi Madduri, Ian Foster, Stian Soiland‐Reyes, Carole Goble (2009): Scientific workflows as services in caGrid: a Taverna and gRAVI approach IEEE International Conference on Web Services (ICWS 2009) doi:10.1109/ICWS.2009.19 [escholar]

Tan, W.; Missier, P.; Madduri, R. & Foster, I. (2009), Building Scientific Workflow with Taverna and BPEL: A Comparative Study in caGrid, in Service-Oriented Computing - ICSOC 2008 Workshops, Springer Berlin / Heidelberg, , pp. 118-129.

Wassink, I.; van der Vet, P. E.; Wolstencroft, K.; Neerincx, P. B. T.; Roos, M.; Rauwerda, H. & Breit, T. (2009), Analysing scientific workflows: why workflows not only connect web services, in IEEE Congress on Services.

Wolstencroft, K.; Fisher, P.; De Roure, D. & Goble, C. (2009), Research In a Connected World, chapter Scientific Workflows.

2008

Alper, P.; Corcho, O. & Goble, C. (2008), Understanding Semantic Aware Grid Middleware for e-Science, Computing and Informatics 27, 93-118.

Aranguren, M. E.; Antezana, E.; Kuiper, M. & Stevens, R. (2008), Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology., BMC bioinformatics 9 Suppl 5.

Aranguren, M.; Wroe, C.; Goble, C. & Stevens, R. (2008), In situ migration of handcrafted ontologies to reason-able forms, Data and Knowledge Engineering In Press, Corrected Proof, –.

Bechhofer, S.; Hauswirth, M.; Hoffmann, J. & Koubarakis, M., ed., (2008), The Semantic Web: Research and Applications, Springer Berlin.

Bechhofer, S.; Yesilada, Y.; Stevens, R.; Jupp, S. & Horan, B. (2008), Using Ontologies and Vocabularies for Dynamic Linking, Internet Computing, IEEE 12(3), 32-39.

Belhajjame, K.; Embury, S. M.; Paton, N. W.; Stevens, R. & Goble, C. A. (2008), Automatic annotation of Web services based on workflow definitions, ACM Trans. Web 2(2), 1–34.

Belhajjame, K.; Goble, C.; Tanoh, F.; Bhagat, J.; Wolstencroft, K.; Stevens, R.; Nzuobontane, E.; McWilliam, H.; Laurent, T. & Lopez, R. (2008), BioCatalogue: A Curated Web Service Registry for the Life Science Community, in Microsoft eScience conference.

Belhajjame, K.; Jones, A. R. & Paton, N. W. (2008), A toolkit for capturing and sharing FuGE experiments, Bioinformatics 24(22), 2647–2649.

Belhajjame, K.; Wolstencroft, K.; Corcho, O.; Oinn, T.; Tanoh, F.; Williams, A. & Goble, C. (2008), Metadata Management in the Taverna Workflow System, in IEEE International Symposium on Cluster Computing and the Grid, IEEE Computer Society, .

De Roure, D. & Goble, C.Danelutto, M.; Fragopoulou, P. & Getov, V., ed. (2008), Re-evaluating the Grid: the social life of programs, Springer.

De Roure, D.; Goble, C. & Stevens, R. (2008), The Design and Realisation of the myExperiment Virtual Research Environment for Social Sharing of Workflows, Future Generation Computer Systems 25, 561-567.

De Roure, D.; Goble, C.; Bhagat, J.; Cruickshank, D.; Goderis, A.; Michaelides, D. & Newman, D. (2008), myExperiment: Defining the Social Virtual Research Environment, in IEEE International Conference on e-Science.

Field, D.; Garrity, G.; Gray, T.; Morrison, N.; Selengu, J.; Sterk, P.; Tatusoca, T.; Thomson, N.; Allen, M.; Angiuoli, S.; Ashburner, M.; Axelrod, N.; Baldauf, S.; Ballard, S.; Boore, J.; Cochrane, G.; Cole, J.; Dawyndt, P.; De Vos, P.; dePamphilis, C.; Edwards, R.; Faruque, N.; Feldman, R.; Gilbert, J.; Gilna, P.; Gloeckner, F.; Goldstein, P.; Guralnick, R.; Haft, D.; Hancock, D.; Hermjakob, H.; Hertz-Fowler, C.; Hugenholtz, P.; Joint, I.; Kagan, L.; Kane, M.; Kennedy, J.; Kowalchuk, G.; Kottman, R.; Kolker, E.; Kravitz, S.; Kyrpides, N.; Leebens-Mack, J.; Lewis, S.; Li, K.; Lister, A.; Lord, P.; Maltsev, N.; Markowitz, V.; Martiny, J.; Methe, B.; Mizrachi, I.; Moxon, R.; Nelson, K.; Parkhill, J.; Proctor, L.; White, O.; Sansone, S.-A.; Spiers, A.; Stevens, R.; Swift, P.; Taylor, C.; Tateno, Y.; Tett, A.; Turner, S.; Ussey, D.; Vaughan, B.; Ward, N.; Whetzel, P.; Gil, I.; Wilson, G. & Wipat, A. (2008), The minimum information about a genome sequence (MIGS) specification, Nature Biotechnology 26, 541-547.

Goble, C. & De Roure, D. (2008), Curating Scientific Web Services and Workflows, Educause Review 43.

Goble, C. & Stevens, R. (2008), State of the nation in data integration for bioinformatics., Journal of Biomedical Informatics.

Goble, C.; Stevens, R.; Hull, D.; Wolstencroft, K. & Lopez, R. (2008), Data Curation + Process Curation = Data Integration + Science, Briefings in Bioinformatics.

Goderis, A.; Brooks, C.; Altintas, I.; Lee, E. & Goble, C. (2008), Heterogeneous Composition of Models of Computation, Future Generation Computer Systems.

Goderis, A.; De Roure, D.; Goble, C.; Bhagat, J.; Cruickshank, D.; Fisher, P.; Michaelides, D. & Tanoh, F. (2008), Discovering Scientific Workflows: The myExperiment Benchmarks, unpublished.

Herrgard, M. J.; Swainston, N.; Dobson, P.; Dunn, W. B.; Arga, Y. K.; Arvas, M.; Buthgen, N.; Borger, S.; Costenoble, R.; Heinemann, M.; Hucka, M.; Le Novere, N.; Li, P.; Liebermeister, W.; Mo, M. L.; Oliveira, A. P.; Petranovic, D.; Pettifer, S.; Simeonidis, E.; Smallbone, K.; Spasie, I.; Weichart, D.; Brent, R.; Broomhead, D. S.; Westerhoff, H. V.; Kurdar, B.; Penttila, M.; Klipp, E.; Palsson, B. O.; Sauer, U.; Oliver, S. G.; Mendes, P.; Nielsen, J. & Kell, D. (2008), A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology, Nat Biotech 26(10), 1155–1160.

Hull, D.; Pettifer, S. & Kell, D. (2008), Defrosting the Digital Library: A Survey Of Bibliographic Tools For for The Next Generation Web, Journal Of Computational Biology.

Jameson, D.; Garwood, K.; Garwood, C.; Booth, T.; Alper, P.; Oliver, S. & Paton, N. (2008), Data capture in bioinformatics: requirements and experiences with Pedro, BMC Bioinformatics 9(1), 183.

Lanzen, A. & Oinn, T. (2008), The Taverna Interaction Service: enabling manual interaction in workflows., Bioinformatics 24(8), 1118-1120.

Li, P.; Castrillo, J.; Velarde, G.; Wassink, I.; Soiland-Reyes, S.; Owen, S.; Withers, D.; Oinn, T.; Pocock, M.; Goble, C.; Oliver, S. & Kell, D. (2008), Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data, BMC Bioinformatics 9(334).

Lin, Y.; Poschen, M.; Procter, R.; Voss, A.; Goble, C.; Bhagat, J.; De Roure, D.; Cruickshank, D. & Rouncefield, M. (2008), Agile Management: Strategies for Developing a Social Networking Site for Scientists., in International Conference on e-Social Science.

Maheshwari, K.; Montagnat, J. & Missier, P. (2008), Extending Taverna to exploit EGEE Grid resources, in e-science.

Missier, P.; Belhajjame, K.; Zhao, J. & Goble, C. (2008), Data lineage model for Taverna workflows with lightweight annotation requirements, in International Provenance and Annotation Workshop.

Missier, P.; Embury, S. & Stapenhurst, R. (2008), Exploiting provenance to make sense of automated data acceptance decisions in scientific workflows, in International Provenance and Annotation Workshop.

Paton, N. (2008), Managing and sharing experimental data: standards, tools and pitfalls., Biochemical Society Transactions 36(Pt 1), 33–36.

Preece, A.; Missier, P.; Embury, S.; Jin, B. & Greenwood, M. (2008), An ontology-based approach to handling information quality in e-Science, Concurrency and Computation: Practice and Experience 20(3), 253–264.

Rennie, C.; Hulme, H.; Fisher, P.; Halp, L.; Agaba, M.; Noyes, H.; Kemp, S. & Brass, A. (2008), A Systematic, Data-driven Approach to the Combined Analysis of Microarray and QTL Data, Developments in Biologicals 132, 293-299.

Roos, M.; Marshall, S.; Gibson, A. & Adriaans, P. (2008), Structuring mined knowledge for the support of hypothesis generation in molecular biology, in SWAT4LS.

Spasic, I.; Schober, D.; Sansone, S.-A.; Rebholz-Schuhmann, D.; Kell, D. & Paton, N. (2008), Facilitating the development of controlled vocabularies for metabolomics technologies with text mining., BMC Bioinformatics 9 Suppl 5, S5.

Stead, D.; Paton, N.; Missier, P.; Embury, S.; Hedeler, C.; Jin, B.; Brown, A. & Preece, A. (2008), Information quality in proteomics, Briefings in Bioinformatics 9(2), 174–188.

Stevens, R. & Lord, P.Staab, S. & Studer, R., ed., (2008), Application of ontologies in bioinformatics, Springer, pp. To be decided.

Stevens, R.; Fisher, P.; Zhao, J.; Goble, C. & Brass, A.Dubitzky, W., ed., (2008), Traversing the bioinformatics landscape, John Wiley and Sons, pp. 141-164.

Stockinger, H.; Attwood, T.; Chohan, S. N. N.; Cфté, R.; Cudré-Mauroux, P.; Falquet, L.; Fernandes, P.; Finn, R. D. D.; Hupponen, T.; Korpelainen, E.; Labarga, A.; Laugraud, A.; Lima, T.; Pafilis, E.; Pagni, M.; Pettifer, S.; Phan, I. & Rahman, N. (2008), Experience using web services for biological sequence analysis., Briefings in bioinformatics.

Yesilada, Y.; Bechhofer, S. & Horan, B.Wallace, M.; Angelides, M. & Mylonas, P., ed., (2008), Dynamic Linking of Web Resources: Customisation and Personalisation, Springer, pp. 1–24.

Zhao, J.; Goble, C.; Stevens, R. & Turi, D. (2008), Mining Tavernas semantic web of provenance**, Concurrency and Computation: Practice and Experience 20(5), 463–472.

2007

Aranguren, M.; Bechhofer, S.; Lord, P.; Sattler, U. & Stevens, R. (2007), Understanding and using the meaning of statements in a bio-ontology: recasting the Gene Ontology in OWL, BMC Bioinformatics 8, 57+.

Belhajjame, K. (2007), Addressing the Issue of Service Volatility in Scientific Workflows, in ICSOC **07: Proceedings of the 5th international conference on Service-Oriented Computing, Springer-Verlag, Berlin, Heidelberg, pp. 377–382.

Belhajjame, K. (2007), Semantic Replaceability of eScience Web Services, in E-SCIENCE **07: Proceedings of the Third IEEE International Conference on e-Science and Grid Computing, IEEE Computer Society, Washington, DC, USA, pp. 449–456.

Brenchley, R.; Tariq, H.; Mcelhinney, H.; Szoor, B.; Huxley-Jones, J.; Stevens, R.; Matthews, K. & Tabernero, L. (2007), The TriTryp Phosphatome: analysis of the protein phosphatase catalytic domains, BMC Genomics 8, 434+.

Brooke, J.; Marsh, J.; Pettifer, S. & Sastry, L. S. (2007), The importance of locality in the visualization of large datasets: Research Articles, Concurrency and Computation: Practice and Experience 19(2), 195–205.

Chen, L.; Shadbolt, N. & Goble, C. (2007), A Semantic Web-Based Approach to Knowledge Management for Grid Applications, Knowledge and Data Engineering, IEEE Transactions on 19(2), 283-296.

Corcho, O.; Alper, P.; Missier, P.; Bechhofer, S. & Goble, C. (2007), Grid metadata management: Requirements and architecture, in IEEE/ACM International Conference on Grid Computing, pp. 97–104.

Corcho, O.; Alper, P.; Missier, P.; Bechhofer, S.; Goble, C. & Xing, W. (2007), Metadata Management in S-OGSA, in International Conference on Computational Science, Springer Berlin / Heidelberg, , pp. 712–719.

De Roure, D. & Frey, J. (2007), Three Perspectives on Collaborative Knowledge Acquisition in e-Science, in Workshop on Semantic Web for Collaborative Knowledge Acquisition.

De Roure, D. & Goble, C. (2007), myExperiment - A Web 2.0 Virtual Research Environment, in International Workshop on Virtual Research Environments and Collaborative Work Environments.

De Roure, D.; Goble, C. & Stevens, R. (2007), Designing the myExperiment Virtual Research Environment for the Social Sharing of Workflows, in IEEE International Conference on e-Science and Grid Computing, IEEE Computer Society, Washington, DC, USA, pp. 603–610.

Fisher, P.; Hedeler, C.; Wolstencroft, K.; Hulme, H.; Noyes, H.; Kemp, S.; Stevens, R. & Brass, A. (2007), A systematic strategy for large-scale analysis of genotype phenotype correlations: identification of candidate genes involved in African trypanosomiasis., Nucleic Acids Research 35(16), 5625–5633.

Fisher, P.; Hedeler, C.; Wolstencroft, K.; Hulme, H.; Noyes, H.; Kemp, S.; Stevens, R. & Brass, A. (2007), A systematic strategy for the discovery of candidate genes responsible for phenotypic variation, BMC Bioinformatics 8(Suppl 8), 7.

Gibson, A.; Gamble, M.; Wolstencroft, K.; Oinn, T. & Goble, C. (2007), The Data Playground: An Intuitive Workflow Specification Environment, in IEEE International Conference on e-Science and Grid Computing, pp. 59–68.

Gibson, A.; Wolstencroft, K. & Stevens, R. (2007), Promotion of Ontological Comprehension: Exposing Terms and Metadata with Web 2.0, in Workshop on Social and Collaborative Construction of Structured Knowledge.

Gil, Y.; Deelman, E.; Ellisman, M.; Fahringer, T.; Fox, G.; Gannon, D.; Goble, C.; Livny, M.; Moreau, L. & Myers, J. (2007), Examining the Challenges of Scientific Workflows, Computer 40(12), 24–32.

Goble, C. & De Roure, D. (2007), Grid 3.0: Services, semantics and society, in IEEE/ACM International Conference on Grid Computing, pp. 1–1.

Goble, C. & De Roure, D. (2007), myExperiment: social networking for workflow-using e-scientists, in Workshop on Workflows in support of large-scale science, ACM Press, New York, NY, USA, pp. 1–2.

Goble, C.; Corcho, O. & Xing, W. (2007), Active Ontology: An Information Integration Approach for Dynamic Information Sources, in International Workshop on Semantic and Grid Computing.

Goble, C.; Wolstencroft, K.; Goderis, A.; Hull, D.; Zhao, J.; Alper, P.; Lord, P.; Wroe, C.; Belhajjame, K.; Turi, D.; Stevens, R.; Oinn, T. & De Roure, D.Baker, C. & Cheung, K.-H., ed., (2007), Knowledge discovery for biology with Taverna, Springer-Verlag New York Inc.

Goderis, A. (2007), Workflow re-use and discovery in bioinformatics, PhD thesis, Computer Science.

Goderis, A.; Brooks, C.; Altintas, I.; Lee, E. & Goble, C. (2007), Composing Different Models of Computation in Kepler and Ptolemy II, in International Conference on Computational Science, Springer Berlin / Heidelberg, , pp. 182–190.

Kotsiopoulos, I.; Missier, P.; Alper, P.; Corcho, O.; Bechhofer, S. & Goble, C. (2007), Architectural Patterns for the Semantic Grid, Springer US, pp. 119–134.

Li, P.; Oinn, T.; Soiland, S. & Kell, D. (2007), Automated manipulation of systems biology models using libSBML within Taverna workflows., Bioinformatics 24, 287-289.

Merelli, E.; Armano, G.; Cannata, N.; Corradini, F.; dInverno, M.; Doms, A.; Lord, P.; Martin, A.; Milanesi, L.; Moeller, S.; Schroeder, M. & Luck, M. (2007), **Agents in bioinformatics, computational and systems biology., Briefings in Bioinformatics 8(1), 45–59.

Missier, P.; Alper, P.; Corcho, O.; Dunlop, I. & Goble, C. (2007), Requirements and Services for Metadata Management, Internet Computing, IEEE 11(5), 17-25.

Missier, P.; Embury, S.; Hedeler, C.; Greenwood, M.; Pennock, J. & Brass, A. (2007), Accelerating Disease Gene Identification Through Integrated SNP Data Analysis, in Data Integration in the Life Sciences - 4th International Workshop, DILS 2007, Philadelphia, PA, USA, June 27-29, 2007. Proceedings, pp. 215–230.

Paton, N. (2007), Automation Everywhere: Autonomics and Data Management, in British National Conference on Databases, Springer Berlin / Heidelberg, , pp. 3–12.

Pettifer, S.; Wolstencroft, K.; Alper, P.; Attwood, T.; Coletta, A.; Goble, C.; Li, P.; Mcdermott, P.; Marsh, J.; Oinn, T.; Sinnott, J. & Thorne, D. (2007), myGrid and UTOPIA: An Integrated Approach to Enacting and Visualising in Silico Experiments in the Life Sciences, in Data Integration in the Life Sciences, Springer Berlin / Heidelberg, , pp. 59–70.

Stevens, R.; Aranguren, M.; Wolstencroft, K.; Sattler, U.; Drummond, N.; Horridge, M. & Rector, A. (2007), Using OWL to model biological knowledge, International Journal of Human-Computer Studies 65(7), 583–594.

Stevens, R.; Lord, P. & Hull, D.Lengauer, T., ed., (2007), Using distributed data and tools in bioinformatics applications, Wiley VCH, pp. 1627-1649.

Stevens, R.; Zhao, J. & Goble, C. (2007), Using provenance to manage knowledge of In Silico experiments, Briefings in Bioinformatics 8(3), 183–194.

Sun, Y.; Wipat, A.; Pocock, M.; Lee, P.; Flanagan, K. & Worthington, J. (2007), Exploring Microbial Genome Sequences to Identify Protein Families on the Grid, IEEE Transactions onInformation Technology in Biomedicine 11(4), 435–442.

Turi, D.; Missier, P.; Goble, C.; De Roure, D. & Oinn, T. (2007), Taverna Workflows: Syntax and Semantics, in IEEE International Conference on e-Science and Grid Computing, pp. 441–448.

Walton, N.; Witherick, D.; Oinn, T. & Benson, K. (2007), Taverna and Workflows in the Virtual Observatory, in Astronomical Data Analysis Software & Systems XVII.

Wolstencroft, K.; Alper, P.; Hull, D.; Wroe, C.; Lord, P.; Stevens, R. & Goble, C. (2007), The myGrid ontology: bioinformatics service discovery, International Journal of Bioinformatics Resesearch and Applications 3(3), 303–325.

Wolstencroft, K.; Stevens, R. & Haarsley, V.Baker, C. & Cheung, K.-H., ed., (2007), Applying OWL Reasoning to Genomics: A Case Study, Springer-Verlag New York Inc.

Wroe, C. & Stevens, R.Lengauer, T., ed., (2007), Ontologies for molecular biology, Wiley VCH, pp. 1061-1085.

Wroe, C.; Goble, C.; Goderis, A.; Lord, P.; Miles, S.; Papay, J.; Alper, P. & Moreau, L. (2007), Recycling workflows and services through discovery and reuse: Research Articles, Concurrency and Computation: Practice and Experience 19(2), 181–194.

Xing, W.; Corcho, O.; Goble, C. & Dikaiakos, M. (2007), An ActOn-based semantic information service for EGEE, in IEEE/ACM International Conference on Grid Computing, pp. 81–88.

Xing, W.; Corcho, O.; Goble, C. & Dikaiakos, M. (2007), Information Quality Evaluation for Grid Information Services, in CoreGRID Symposium, Springer US, , pp. 165–174.

Zhang, N.; Yao, L.; Nenadic, A.; Chin, J.; Goble, C.; Rector, A.; Chadwick, D.; Otenko, S. & Shi, Q. (2007), Achieving fine-grained access control in virtual organizations: Research Articles, Concurrency and Computation: Practice and Experience 19(9), 1333–1352.

Zhao, J. (2007), A conceptual model for e-science provenance, PhD thesis, Computer Science, University of Manchester.

2006

Albeck, S.; Alzari, P.; Andreini, C.; Banci, L.; Berry, I. M.; Bertini, I.; Cambillau, C.; Canard, B.; Carter, L.; Cohen, S. X.; Diprose, J. M.; Dym, O.; Esnouf, R. M.; Felder, C.; Ferron, F.; Guillemot, F.; Hamer, R.; Ben Jelloul, M.; Laskowski, R. A.; Laurent, T.; Longhi, S.; Lopez, R.; Luchinat, C.; Malet, H.; Mochel, T.; Morris, R. J.; Moulinier, L.; Oinn, T.; Pajon, A.; Peleg, Y.; Perrakis, A.; Poch, O.; Prilusky, J.; Rachedi, A.; Ripp, R.; Rosato, A.; Silman, I.; Stuart, D. I.; Sussman, J. L.; Thierry, J.-C.; Thompson, J. D.; Thornton, J. M.; Unger, T.; Vaughan, B.; Vranken, W.; Watson, J. D.; Whamond, G. & Henrick, K. (2006), SPINE bioinformatics and data-management aspects of high-throughput structural biology, Acta Crystallographica Section D 62(10), 1184–1195.

Ananiadou, S.; Kell, D. & Tsujii, J.-I. (2006), Text mining and its potential applications in systems biology., Trends in Biotechnology 24, 571-579.

Bechhofer, S.; Stevens, R. & Lord, P. (2006), GOHSE: Ontology driven linking of biology resources, Web Semantics: Science, Services and Agents on the World Wide Web 4(3), 155–163.

Bechhofer, S.; Yesilada, Y.; Horan, B. & Goble, C. (2006), Knowledge-Driven Hyperlinks: Linking in the Wild, in Adaptive Hypermedia and Adaptive Web-Based Systems, Springer Berlin / Heidelberg, Dublin, Ireland, pp. 1-10.

Belhajjame, K. & Embury, S. M. (2006), A Model-Driven Approach to Service Composition in Virtual Enterprises, in SCC **06: Proceedings of the IEEE International Conference on Services Computing, IEEE Computer Society, Washington, DC, USA, pp. 214–221.

Belhajjame, K.; Embury, S.; Paton, N.; Stevens, R. & Goble, C. (2006), Automatic Annotation of Web Services Based on Workflow Definitions, in International Semantic Web Conference, Springer Berlin / Heidelberg, Athens, GA, USA, pp. 116–129.

Bradley, J.; Brown, C.; Carpenter, B.; Chang, V.; Crisp, J.; Crouch, S.; De Roure, D.; Newhouse, S.; Li, G.; Papay, J.; Walker, C. & Wookey, A. (2006), The OMII Software Distribution, in All Hands Meeting.

Chen, L.; Shadbolt, N.; Goble, C. & Tao, F. (2006), Managing Semantic Metadata for Web Grid Services, International Journal of Web Services Research 3(4), 73-94.

Chen, L.; Shadbolt, N.; Tao, F. & Goble, C. (2006), Engineering Grid Resources Metadata for Resource and Knowledge Sharing**, International Journal of Web Services Research 4, 73-94.

Corcho, O. (2006), Knowledge of the Grid: a Grid resource ontology, in Cracow Grid Workshop.

Corcho, O.; Alper, P.; Kotsiopoulos, I.; Missier, P.; Bechhofer, S. & Goble, C. (2006), An overview of S-OGSA: A Reference Semantic Grid Architecture, Web Semantics: Science, Services and Agents on the World Wide Web 4(2), 102–115.

Corcho, O.; Alper, P.; Kotsiopoulos, I.; Missier, P.; Bechhofer, S. & Goble, C. (2006), S-OGSA: a Reference Semantic Grid Architecture, Elsevier Journal Web Semantics, Special Section on Semantic Grid:Semantic Grid –The Convergence of Technologies 4(2), 81-154.

Corcho, O.; Alper, P.; Missier, P.; Kotsiopoulos, I.; Dunlop, I.; Bechhofer, S. & Goble, C. (2006), Semantic Binding Specifications in S-OGSA, in Cracow Grid Workshop.

Craddock, T.; Lord, P.; Harwood, C. & Wipat, A. (2006), e-Science Tools For The Genomic Scale Characterisation Of Bacterial Secreted Proteins, in Simon J. Cox, ed., All Hands Meeting, National e-Science Centre, , pp. 788–795.

De Roure, D. & Sure, Y. (2006), Semantic Grid–The convergence of technologies, Web Semantics: Science, Services and Agents on the World Wide Web 4(2), 82–83.

De Roure, D. (2006), e-Research the JISC way, in All Hands Meeting.

De Roure, D.; Frey, J.; Michaelides, D. & Page, K. (2006), The Collaborative Semantic Grid, in International Symposium on Collaborative Technologies and Systems, pp. 411-418.

Goble, C.; Corcho, O.; Alper, P. & De Roure, D. (2006), e-Science and the Semantic Web: A Symbiotic Relationship, in International Conference on Algorithmic Learning Theory, Springer Berlin / Heidelberg, , pp. 12–12.

Goble, C.; Kotsiopoulos, I.; Corcho, O.; Alper, P. & Bechhofer, S. (2006), S-OGSA as a Reference Architecture for OntoGrid and for the Semantic Grid, in GGF Semantic Grid Workshop.

Goderis, A.; Li, P. & Goble, C. (2006), Workflow discovery: the problem, a case study from e-Science and a graph-based solution, in International Conference on Web Services, pp. 312–319.

Hull, D.; Wolstencroft, K.; Stevens, R.; Goble, C.; Pocock, M.; Li, P. & Oinn, T. (2006), Taverna: a tool for building and running workflows of services., Nucleic Acids Research 34(Web Server issue), 729-732.

Kell, D. (2006), Metabolomics, modelling and machine learning in systems biology - towards an understanding of the languages of cells., FEBS Journal 273(5), 873–894.

Li, P.; Brass, A.; Pinney, J.; Oinn, T.; Kell, D. & Goble, C. (2006), Taverna workflows for systems biology, in International Conference on Systems Biology.

Marsh, J.; Glencross, M.; Pettifer, S. & Hubbold, R. (2006), A Network Architecture Supporting Consistent Rich Behavior in Collaborative Interactive Applications, Visualization and Computer Graphics, IEEE Transactions on 12(3), 405-416.

McDermott, P.; Sinnott, J.; Thorne, D.; Pettifer, S. & Attwood, T. (2006), An Architecture for Visualisation and Interactive Analysis of Proteins, in International Conference on Coordinated and Multiple Views in Exploratory Visualization, pp. 55-68.

Missier, P.; Embury, S.; Greenwood, M.; Preece, A. & Jin, B. (2006), Quality views: capturing and exploiting the user perspective on data quality, in International Conference on Very Large Data Bases, VLDB Endowment, , pp. 977–988.

Nenadic, A.; Zhang, N.; Chin, J. & Goble, C. (2006), FAME: Adding Multi-Level Authentication to Shibboleth, in IEEE International Conference on e-Science and Grid Computing, IEEE Computer Society, Washington, DC, USA, pp. 157.

Oinn, T.; Greenwood, M.; Addis, M.; Alpdemir, N.; Ferris, J.; Glover, K.; Goble, C.; Goderis, A.; Hull, D.; Marvin, D.; Li, P.; Lord, P.; Pocock, M.; Senger, M.; Stevens, R.; Wipat, A. & Wroe, C. (2006), Taverna: lessons in creating a workflow environment for the life sciences, Concurrency and Computation: Practice and Experience 18(10), 1067–1100.

Oinn, T.; Li, P.; Kell, D.; Goble, C.; Goderis, A.; Greenwood, M.; Hull, D.; Stevens, R.; Turi, D. & Zhao, J.Taylor, I.; Gannon, D. & Shields, M., ed., (2006), Taverna/myGrid: Aligning a Workflow System with the Life Sciences Community, Springer-Verlag London Ltd.

Rose, C.; Turi, D.; Williams, A.; Wolstencroft, K. & Taylor, C. (2006), Web Services for the DDSM and Digital Mammography Research, in International Workshop on Digital Mammography, Springer Berlin / Heidelberg, , pp. 376–383.

Sanchez-Gestido, M.; Blanco-Abruna, L.; Perez-Hernandez, M.; Gonzalez-Cabero, R.; Gomez-Perez, A. & Corcho, O. (2006), Complex Data-Intensive Systems and Semantic Grid: Applications in Satellite Missions, in IEEE International Conference on e-Science and Grid Computing, pp. 158.

Senger, M.; Oinn, T. & Rice, P. (2006), Upcoming Standards for Data Analysis in Bioinformatics, in Grid Computing in Life Sciences, pp. 22-31.

Stevens, R.; Lord, P. & Gibson, A. (2006), Something Nasty in the Woodshed: The Public Knowledge Model, in OWLED Workshop on OWL: Experiences and Directions.

Wolstencroft, K.; Lord, P.; Tabernero, L.; Brass, A. & Stevens, R. (2006), Protein classification using ontology classification, Bioinformatics 22(14), 2530-e538.

Yu, Q. (2006), BioBay: Shopping for Services in the Life Sciences, Master**s thesis, Computer Science, University of Manchester.

Zhao, J.; Goble, C. & Stevens, R. (2006), An Identity Crisis in the Life Sciences, in International Provenance and Annotation Workshop, Springer Berlin / Heidelberg, , pp. 254–269.

2005

Alpdemir, N.; Gounaris, A.; Mukherjee, A.; Fitzgerald, D.; Paton, N.; Watson, P.; Fernandes, A. & Smith, J. (2005), Experience on Performance Evaluation with OGSA-DQP, in All Hands Meeting.

Alpdemir, N.; Mukherjee, A.; Gounaris, A.; Paton, N.; Fernandes, A.; Sakellariou, R.; Watson, P. & Li, P. (2005), Using OGSA-DQP to Support Scientific Applications for the Grid, in Scientific Applications of Grid Computing, Springer Berlin / Heidelberg, Beijing, China, pp. 13–24.

Alpdemir, N.; Mukherjee, A.; Paton, N.; Fernandes, A.; Watson, P.; Glover, K.; Greenhalgh, C.; Oinn, T. & Tipney, H. (2005), Contextualised Workflow Execution in MyGrid, in European Grid Conference, Springer Berlin / Heidelberg, Amsterdam, The Netherlands, pp. 444–453.

Ashish, N.; Goble, C. & Sheth, A. (2005), Introduction, International Journal of Digital Libraries 5(2), 71.

Atkinson, M.; De Roure, D.; Dunlop, A.; Fox, G.; Henderson, P.; Hey, T.; Paton, N.; Newhouse, S.; Parastatidis, S.; Trefethen, A.; Watson, P. & Webber, J. (2005), Web Service Grids: an evolutionary approach: Research Articles, Concurrency and Computation: Practice and Experience 17(2-4), 377–389.

Belhajjame, K.; Embury, S.; Fan, H.; Goble, C.; Hermjakob, H.; Hubbard, S.; Jones, D.; Jones, P.; Martin, N.; Oliver, S.; Orengo, C.; Paton, N.; Poulovassilis, A.; Siepen, J.; Stevens, R.; Taylor, C.; Vinod, N.; Zamboulis, L. & Zhu, W. (2005), Proteome Data Integration: Characteristics and Challenges, in All Hands Meeting.

Belhajjame, K.; Vargas-Solar, G. & Collet, C. (2005), Building Information Systems by Orchestrating Open Services, in IDEAS **05: Proceedings of the 9th International Database Engineering & Application Symposium, IEEE Computer Society, Washington, DC, USA, pp. 27–36.

Belhajjame, K.; Vargas-Solar, G. & Collet, C. (2005), Pyros - an environment for building and orchestrating open services, in SCC **05: Proceedings of the 2005 IEEE International Conference on Services Computing, IEEE Computer Society, Washington, DC, USA, pp. 155–164.

Chen, L.; Shadbolt, N.; Tao, F.; Goble, C.; Puleston, C. & Cox, S. (2005), Semantics-Assisted Problem Solving On The Semantic Grid, Computational Intelligence 21(2), 157-176.

De Roure, D. (2005), The Semantic Grid: Past, Present and Future, in European Semantic Web Conference, Springer Berlin / Heidelberg, , pp. 726.

De Roure, D.; Jennings, N. & Shadbolt, N. (2005), The Semantic Grid: Past, Present, and Future, Proceedings of the IEEE 93(3), 669–681.

Divoli, A.; Winter, R.; Pettifer, S. & Attwood, T. (2005), BioQSpace: an interactive visualisation tool for clustering MEDLINE abstracts, in Computational Biology.

Egglestone, S.; Alpdemir, N.; Greenhalgh, C.; Mukherjee, A. & Roberts, I. (2005), A portal interface to myGrid workflow technology, in All Hands Meeting.

Garwood, K.; Lord, P.; Parkinson, H.; Paton, N. & Goble, C. (2005), Pedro Ontology Services: A Framework for Rapid Ontology Markup, in European Semantic Web Conference, Springer Berlin / Heidelberg, , pp. 578–591.

Goble, C. & Bechhofer, S. (2005), OntoGrid: A Semantic Grid Reference Architecture, CT Watch Quarterly 1(4).

Goble, C. & Ludascher, B. (2005), Introduction, ACM SIGMOD Record 34(3), 3-4.

Goble, C. (2005), Putting semantics into e-Science and grids, in International Conference on e-Science and Grid Computing, pp. 1 pp.+.

Goble, C. (2005), The Montagues and the Capulets Part 2, in ACM International Conference on Knowledge Capture.

Goble, C. (2005), Using the Semantic Web for e-Science: Inspiration, Incubation, Irritation, in International Semantic Web Conference, Springer Berlin / Heidelberg, , pp. 1–3.

Goble, C.; Gomez-Perez, A.; Gonzalez-Cabero, R. & Perez-Hernandez, M. (2005), ODEGSG Framework, Knowledge-Based Annotation and Design of Grid Services, in International Conference on Service-Oriented Computing, Springer Berlin / Heidelberg, , pp. 341–352.

Goble, C.; Gomez-Perez, A.; Gonzalez-Cabero, R. & Perez-Hernandez, M. (2005), ODESGS framework, knowledge-based markup for semantic grid services, in International Conference on Knowledge Capture, ACM, New York, NY, USA, pp. 199–200.

Goble, C.; Kuo, D.; Kotsiopoulos, I.; Corcho, O.; Alper, P. & Bechhofer, S. (2005), Towards a Semantic Grid Architecture, in CoreGrid workshop on Knowledge and Data Management in Grids..

Goble, C.; Stevens, R. & Bechhofer, S. (2005), The Semantic Web and Knowledge Grids, Drug Discovery Today: Technologies 2(3), 225–233.

Goderis, A.; Sattler, U. & Goble, C. (2005), Applying descriptions logics for workflow reuse and repurposing, in International Description Logics Workshop.

Goderis, A.; Sattler, U.; Lord, P. & Goble, C. (2005), Seven Bottlenecks to Workflow Reuse and Repurposing, in International Semantic Web Conference, Springer Berlin / Heidelberg, , pp. 323–337.

Hull, D.; Stevens, R. & Lord, P. (2005), Describing Web Services for user-oriented retrieval, in W3C Workshop on Frameworks for Semantics in Web Services.

Lanzen, A.; Grindhaug, S.; Oinn, T. & Pal, P. (2005), An Automatic Genome Annotation Pipeline, in Network Tools and Applications in Biology.

Lord, P.; Alper, P.; Wroe, C. & Goble, C. (2005), Feta: A Light-Weight Architecture for User Oriented Semantic Service Discovery, in European Semantic Web Conference, Springer Berlin / Heidelberg, , pp. 17–31.

Lord, P.; Stevens, R.; Butler, J. & McEntire, R. (2005), The eighth annual bio-ontologies meeting., PLoS computational biology 1(7), e77.

Nenadic, A.; Zhang, N.; Cheetham, B. & Goble, C. (2005), RSA-based Certified Delivery of E-Goods Using Verifiable and Recoverable Signature Encryption, Journal of Universal Computer Science 11(1), 175–192.

Pettifer, S.; Attwood, T. & Sinnott, J.Azuaje, F. & Dopazo, J., ed., (2005), Integrated approaches for bioinformatics data analysis and visualisation - challenges, opportunities and new solutions, John Wiley, pp. 137-152.

Sabou, M.; Wroe, C.; Goble, C. & Mishne, G. (2005), Learning domain ontologies for Web service descriptions: an experiment in bioinformatics, in International Conference on World Wide Web, ACM Press, New York, NY, USA, pp. 190–198.

Sun, Y.; Wipat, A.; Pocock, M.; Lee, P.; Watson, P.; Flanagan, K. & Worthington, J. (2005), A grid-based system for microbial genome comparison and analysis, in IEEE International Symposium on Cluster Computing and the Grid, IEEE Computer Society, Washington, DC, USA, pp. 977–984.

Wolstencroft, K.; Brass, A.; Horrocks, I.; Lord, P.; Sattler, U.; Turi, D. & Stevens, R. (2005), A Little Semantic Web Goes a Long Way in Biology, in International Semantic Web Conference, Springer Berlin / Heidelberg, , pp. 786-800.

Wolstencroft, K.; Lord, P.; Tabernero, L.; Brass, A. & Stevens, R. (2005), Using Ontology Reasoning to Classify Protein Phosphatases, in Bio-ontologies Meeting.

Wolstencroft, K.; Mcentire, R.; Stevens, R.; Tabernero, L. & Brass, A. (2005), Constructing ontology-driven protein family databases, Bioinformatics 21(8), 1685–1692.

Wolstencroft, K.; Oinn, T.; Goble, C.; Ferris, J.; Wroe, C.; Lord, P.; Glover, K. & Stevens, R. (2005), Panoply of Utilities in Taverna, in First International Conference on e-Science and Grid Computing, IEEE Computer Society, Washington, DC, USA, pp. 156–162.

Wolstencroft, K.; Stevens, R.; Tabernero, L. & Brass, A. (2005), PhosphaBase: an ontology-driven database resource for protein phosphatases., Proteins 58(2), 290–294.

Zhang, N.; Yao, L.; Chin, J.; Shi, Q.; Nenadic, A.; Mcnab, A.; Rector, A. & Goble, C. (2005), Plugging a scalable authentication framework into Shibboleth, in IEEE International Workshops on Enabling Technologies: Infrastructure for Collaborative Enterprise, pp. 271–276.

Zhao, J.; Lord, P.; Alper, P.; Wroe, C. & Goble, C. (2005), The implications of Semantic Web technologies for support ofthe e-Science process, in All Hands Meeting.

2004

Alpdemir, N.; Mukherjee, A.; Gounaris, A.; Paton, N.; Watson, P.; Fernandes, A. & Fitzgerald, D. (2004), OGSA-DQP: A Service for Distributed Querying on the Grid, in International Conference on Extending Database Technology, Springer Berlin / Heidelberg, Heraklion, Crete, Greece, pp. 858–861.

Bada, M.; Stevens, R.; Goble, C.; Gil, Y.; Ashburner, M.; Blake, J. A.; Cherry, J. M.; Harris, M. & Lewis, S. (2004), A short study on the success of the Gene Ontology, in World Wide Web Conference, pp. 235–240.

Bada, M.; Turi, D.; Mcentire, R. & Stevens, R. (2004), Using reasoning to guide annotation with gene ontology terms in GOAT, ACM SIGMOD Record 33(2), 27–32.

Brooke, J.; Fellows, D.; Garwood, K. & Goble, C. (2004), Semantic Matching of Grid Resource Descriptions, in European Across Grids Conference, Springer Berlin / Heidelberg, Nicosia, Cyprus, pp. 240-24.

Brown, A.; Pettifer, S. & Stevens, R. (2004), Evaluation of a non-visual molecule browser, ACM SIGACCESS Accessibility and Computing 77-78, 40–47.

Chen, L.; Cox, S.; Tao, F.; Shadbolt, N.; Puleston, C. & Goble, C. (2004), Empowering Resource Providers to Build the Semantic Grid, in IEEE/WIC/ACM International Conference on Web Intelligence, IEEE Computer Society, Washington, DC, USA, pp. 271–277.

De Roure, D. & Hendler, J. (2004), E-Science: the grid and the Semantic Web, Intelligent Systems, IEEE 19(1), 65-71.

De Roure, D.; Gil, Y. & Hendler, J. (2004), Guest editors introduction: E-Science**, Intelligent Systems, IEEE 19(1), 24-25.

Flanagan, K.; Stevens, R.; Pocock, M.; Lee, P. & Wipat, A. (2004), Ontology for genome comparison and genomic rearrangements: Conference Papers, Comparative and Functional Genomics 5(6-7), 537–544.

Gaizauskas, R.; Davis, N.; Demetriou, G.; Guo, Y. & Roberts, I. (2004), Integrating Biomedical Text Mining Services into a Distributed Workflow Environment, in All Hands Meeting.

Goble, C. & De Roure, D. (2004), The Semantic Grid: Building Bridges and Busting Myths, in Ramon de Mantaras & Lorenza Saitta, ed., European Conference on Artificial Intelligence, IOS Press, , pp. 1129–1135.

Goble, C. & Wroe, C. (2004), The Montagues and the Capulets, Comparative and Functional Genomics 5(8), 623-632.

Hull, D.; Stevens, R.; Lord, P.; Wroe, C. & Goble, C. (2004), Treating shimantic web syndrome with ontologies, in AKT Workshop on Semantic Web Services.

Lord, P.; Alper, P.; Wroe, C.; Stevens, R.; Goble, C.; Zhao, J.; Hull, D. & Greenwood, M. (2004), The Semantic Web: Service discovery and provenance in myGrid, in W3C Workshop on Semantic Web for Life Sciences.

Lord, P.; Bechhofer, S.; Wilkinson, M.; Schiltz, G.; Gessler, D.; Hull, D.; Goble, C. & Stein, L. (2004), Applying Semantic Web Services to Bioinformatics: Experiences Gained, Lessons Learnt, in International Semantic Web Conference, Springer Berlin / Heidelberg, , pp. 350–364.

Oinn, T.; Addis, M.; Ferris, J.; Marvin, D.; Greenwood, M.; Goble, C.; Wipat, A.; Li, P. & Carver, T. (2004), Delivering web service coordination capability to users, in International World Wide Web Conference on Alternate track papers & posters, ACM, New York, NY, USA, pp. 438–439.

Oinn, T.; Addis, M.; Ferris, J.; Marvin, D.; Senger, M.; Greenwood, M.; Carver, T.; Glover, K.; Pocock, M.; Wipat, A. & Li, P. (2004), Taverna: a tool for the composition and enactment of bioinformatics workflows., Bioinformatics 20(17), 3045–3054.

Paton, N. (2004), Databases and the Grid: JDBC in WSDL, or Something Altogether Different?, in International Conference on Semantics of a Networked World, Springer Berlin / Heidelberg, , pp. 1–13.

Pettifer, S.; Sinnott, J. & Attwood, T. (2004), UTOPIA User-Friendly Tools for Operating Informatics Applications, Comparative and Functional Genomics 5(1), 55-60.

Sharman, N.; Alpdemir, N.; Ferris, J.; Greenwood, M.; Li, P. & Wroe, C. (2004), The myGrid Information Model, in All Hands Meeting.

Stevens, R.; McEntire, R.; Goble, C.; Greenwood, M.; Zhao, J.; Wipat, A. & Li, P. (2004), myGrid and the drug discovery process, Drug Discovery Today: BIOSILICO 2(4), 140–148.

Stevens, R.; Tipney, H.; Wroe, C.; Oinn, T.; Senger, M.; Lord, P.; Goble, C.; Brass, A. & Tassabehji, M. (2004), Exploring Williams-Beuren syndrome using myGrid, Bioinformatics 20(1), 303–310.

Stevens, R.; Tipney, H.; Wroe, C.; Oinn, T.; Senger, M.; Lord, P.; Goble, C.; Brass, A. & Tassabehji, M. (2004), Genome Science performed with e-Science Tools, in All Hands Meeting, pp. 768–775.

Stevens, R.; Wroe, C.; Lord, P. & Goble, C.Staab, S. & Studer, R., ed., (2004), Ontologies in bioinformatics, Springer, pp. 635-657.

Wipat, A.; Sun, Y.; Pocock, M.; Lee, P.; Watson, P. & Flanagan, K. (2004), Developing Grid-based Systems for Microbial Genome Comparisons: The Microbase Project, in All Hands Meeting.

Wroe, C.; Goble, C.; Greenwood, M.; Lord, P.; Miles, S.; Papay, J.; Payne, T. & Moreau, L. (2004), Automating experiments using semantic data in a bioinformatics grid, Intelligent Systems, IEEE 19(1), 48–55.

Wroe, C.; Lord, P.; Miles, S.; Papay, J.; Moreau, L. & Goble, C. (2004), Recycling Services and Workflows through Discovery and Reuse, in All Hands Meeting.

Yesilada, Y.; Stevens, R.; Goble, C. & Hussein, S. (2004), Rendering tables in audio: the interaction of structure and reading styles, ACM SIGACCESS Accessibility and Computing 77-78, 16–23.

Zhao, J.; Goble, C. & Stevens, R. (2004), Semantic web applications to e-science in silico experiments, in International World Wide Web Conference, ACM, New York, NY, USA, pp. 284–285.

Zhao, J.; Goble, C.; Stevens, R. & Bechhofer, S. (2004), Semantically Linking and Browsing Provenance Logs for E-science, in International IFIP Conference on Semantics of a Networked World, Springer Berlin / Heidelberg, , pp. 158–176.

Zhao, J.; Stevens, R.; Wroe, C.; Greenwood, M. & Goble, C. (2004), The Origin and History of in silico Experiments, in All Hands Meeting.

Zhao, J.; Wroe, C.; Goble, C.; Stevens, R.; Quan, D. & Greenwood, M. (2004), Using Semantic Web Technologies for Representing E-science Provenance, in International Semantic Web Conference, Springer Berlin / Heidelberg, , pp. 92–106.

2003

Addis, M.; Ferris, J.; Greenwood, M.; Li, P.; Marvin, D.; Oinn, T. & Wipat, A. (2003), Experiences with e-Science workflow specification and enactment in bioinformatics, in All Hands Meeting.

Alpdemir, N.; Mukherjee, A.; Paton, N.; Fernandes, A.; Gounaris, A. & Smith, J. (2003), An Experience Report on Designing and Building OGSA-DQP: A Service Based Distributed Query Processor for the Grid, in Global Grid Forum Workshop on Designing and Building Grid Services.

Alpdemir, N.; Mukherjee, A.; Paton, N.; Watson, P.; Fernandes, A.; Gounaris, A. & Smith, J. (2003), Service-Based Distributed Querying on the Grid, in Grid Computing, Springer Berlin / Heidelberg, , pp. 467–482.

Bada, M.; McEntire, R.; Wroe, C. & Stevens, R. (2003), GOAT: The Gene Ontology Annotation Tool, in All Hands Meeting.

Bechhofer, S.; Goble, C.; Kampa, S.; Hall, M. & De Roure, D.Handshuh, S. & Staab, S., ed., (2003), COHSE: Conceptual Open Hypermedia Service, IOS Press,US.

Camon, E.; Magrane, M.; Barrell, D.; Binns, D.; Fleischmann, W.; Kersey, P.; Mulder, N.; Oinn, T.; Maslen, J.; Cox, A. & Apweiler, R. (2003), The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro., Genome Research 13(4), 662–672.

Chen, L.; Shadbolt, N.; Goble, C.; Tao, F.; Cox, S.; Puleston, C. & Smart, P. (2003), Towards a Knowledge-Based Approach to Semantic Service Composition, in International Semantic Web Conference, Springer Berlin / Heidelberg, , pp. 319-334.

Chen, L.; Shadbolt, N.; Tao, F.; Puleston, C.; Goble, C. & Cox, S. (2003), Exploiting Semantics for e-Science on the Semantic Grid, in IEEE/WIC International Conference on Web Intelligence / Intelligent Agent Technology.

Gaizauskas, R.; Hepple, M.; Davis, N.; Guo, Y.; Harkema, H.; Roberts, A. & Roberts, I. (2003), AMBIT: Acquiring Medical and Biological Information from Text, in Simon Cox, ed., All Hands Meeting, pp. 370–373.

Goble, C. (2003), The Grid Needs You! Enlist Now, in On The Move to Meaningful Internet Systems, Springer Berlin / Heidelberg, , pp. 589–600.

Goble, C. (2003), The Semantic Web: A Killer App for AI?, in International Conference on Artificial Intelligence: Methodology, Systems, and Applications, Springer Berlin / Heidelberg, .

Goble, C. (2003), The Semantic Web: an evolution for a revolution (editor), Elsevier Journal of Computer Networks 42(5), 551-556.

Goble, C.; De Roure, D.; Shadbolt, N. & Fernandes, A.Foster, I. & Kesselman, C., ed., (2003), Enhancing Services and Applications with Knowledge and Semantics, Morgan Kaufmann.

Goble, C.; Pettifer, S.; Stevens, R. & Greenhalgh, C.Foster, I. & Kesselman, C., ed., (2003), Knowledge Integration: In silico Experiments in Bioinformatics, Morgan Kaufmann.

Goble, C.; Wroe, C. & Stevens, R. (2003), The myGrid project: services, architecture and demonstrator, in All Hands Meeting, pp. 595-603.

Greenwood, M.; Goble, C.; Stevens, R.; Zhao, J.; Addis, M.; Marvin, D.; Moreau, L. & Oinn, T. (2003), Provenance of e-Science Experiments - experience from Bioinformatics, in All Hands Meeting, pp. 223–226.

Iyengar, A. & De Roure, D. (2003), Guest editors introduction**, Knowledge and Data Engineering, IEEE Transactions on 15(4), 769-770.

Li, P.; Jennings, C.; Owen, K.; Oinn, T.; Stevens, R.; Pearce, S. & Wipat, A. (2003), Association of variations in I kappa B-epsilon with Graves** disease using classical and myGrid methodologies, in All Hands Meeting.

Lord, P.; Stevens, R.; Brass, A. & Goble, C. (2003), Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation, Bioinformatics 19(10), 1275-1283.

Lord, P.; Stevens, R.; Brass, A. & Goble, C. (2003), Semantic similarity measures as tools for exploring the gene ontology, in Proceedings of Pacific Symposium on Biocomputing, pp. 601-612.

Lord, P.; Wroe, C.; Stevens, R.; Goble, C.; Miles, S.; Moreau, L.; Decker, K.; Payne, T. & Papay, J. (2003), Semantic and Personalised Service Discovery, in All Hands Meeting.

Lord, P.; Wroe, C.; Stevens, R.; Goble, C.; Miles, S.; Moreau, L.; Decker, K.; Payne, T. & Papay, J. (2003), Semantic and Personalised Service Discovery, in W. K. Cheung & Y. Ye, ed., Workshop on Knowledge Grid and Grid Intelligence, Department of Mathematics and Computing Science, Saint Mary**s University, , pp. 100–107.

Moreau, L.; Miles, S.; Goble, C.; Greenwood, M.; Dialani, V.; Addis, M.; Alpdemir, N.; Cawley, R.; De Roure, D.; Ferris, J.; Gaizauskas, R.; Glover, K.; Greenhalgh, C.; Li, P.; Liu, X.; Lord, P.; Luck, M.; Marvin, D.; Oinn, T.; Paton, N.; Pettifer, S.; Radenkovic, M.; Roberts, A.; Robinson, A.; Rodden, T.; Senger, M.; Sharman, N.; Stevens, R.; Warboys, B.; Wipat, A. & Wroe, C. (2003), On the Use of Agents in a BioInformatics Grid, in Sangsan Lee; Satoshi Sekguchi; Satoshi Matsuoka & Mitsuhisa Sato, ed., IEEE/ACM Workshop on Agent Based Cluster and Grid Computing, pp. 653–661.

Oinn, T. (2003), Talisman-rapid application development for the grid, Bioinformatics 19, i212-i214.

Parastatidis, S. & Watson, P. (2003), NEReSC Core Grid Middleware, in All Hands Meeting, pp. 549-556.

Pickles, S.; Foster, M.; MacLaren, J.; Marsh, J. & Pettifer, S. (2003), Grid-Enabled Desktop Environments: The GRENADE Project, in All Hands Meeting.

Senger, M.; Rice, P. & Oinn, T. (2003), Soaplab - a unified Sesame door to analysis tools, in All Hands Meeting.

Stevens, R.; Glover, K.; Greenhalgh, C.; Jennings, C.; Pearce, S.; Li, P.; Radenkovic, M. & Wipat, A. (2003), Performing in silico experiments on the Grid: A Users Perspective, in All Hands Meeting, pp. 43-50.

Stevens, R.; Goble, C.; Paton, N.; Bechhofer, S.; Ng, G.; Baker, P. & Brass, A.Lacroix, Z. & Critchlow, T., ed., (2003), Complex Query Formulation Over Diverse Information Sources in TAMBIS, Morgan Kaufmann.

Stevens, R.; Robinson, A. & Goble, C. (2003), myGrid: personalised bioinformatics on the information grid., Bioinformatics 19 Suppl 1, i302-4.

Stevens, R.; Wroe, C.; Bechhofer, S.; Lord, P.; Rector, A. & Goble, C. (2003), Building Ontologies in DAML + OIL, Comparative and Functional Genomics 4(1), 133-141.

Taylor, C.; Paton, N.; Garwood, K.; Kirby, P.; Stead, D.; Yin, Z.; Deutsch, E.; Selway, L.; Walker, J.; Riba-Garcia, I.; Mohammed, S.; Deery, M.; Howard, J.; Dunkley, T.; Aebersold, R.; Kell, D.; Lilley, K.; Roepstorff, P.; Yates, J.; Brass, A.; Brown, A.; Cash, P.; Gaskell, S.; Hubbard, S. & Oliver, S. (2003), A systematic approach to modeling, capturing, and disseminating proteomics experimental data, Nature Biotechnology 21, 247-254.

Wroe, C.; Stevens, R.; Goble, C. & Ashburner, M. (2003), A methodology to migrate the gene ontology to a description logic environment using daml+oil, in Pacific Symposium on Biocomputing, pp. 624-635.

Wroe, C.; Stevens, R.; Goble, C.; Roberts, A. & Greenwood, M. (2003), A suite of DAML+ OIL ontologies to describe bioinformatics web services and data, International Journal of Cooperative Information Systems 12, 197–224.

Zhao, J.; Goble, C.; Greenwood, M.; Wroe, C. & Stevens, R. (2003), Annotating, linking and browsing provenance logs for e-Science, in International Semantic Web Conference.

2002

Bechhofer, S.; Carr, L.; Goble, C.; Kampa, S. & Miles-Board, T. (2002), The Semantics of Semantic Annotation, in DOA/CoopIS/ODBASE 2002 Confederated International Conferences, Springer-Verlag, London, UK, pp. 1152–1167.

Chen, L.; Cox, S.; Goble, C.; Keane, A.; Roberts, A.; Shadbolt, N.; Smart, P. & Tao, F. (2002), Engineering Knowledge for Engineering Grid Applications, in EuroWeb.

De Roure, D. & Goble, C. (2002), The Semantic Grid, in VizGrid Symposium.

Goble, C. & De Roure, D. (2002), The Grid: an application of the semantic web, ACM SIGMOD Record 31(4), 65–70.

Goble, C. & De Roure, D.Kashyap, V. & Shklar, L., ed., (2002), The Semantic Web and Grid Computing, IOS Press,US.

Greenwood, M.; Wroe, C.; Stevens, R.; Goble, C. & Addis, M. (2002), Position Paper: Are Bioinformaticians doing e-Business?, in EuroWeb.

Hosseini, M.; Pettifer, S. & Georganas, N. (2002), Visibility-based interest management in collaborative virtual environments, in International Conference on Collaborative Virtual Environments, ACM, New York, NY, USA, pp. 143–144.

Peim, M.; Franconi, E.; Paton, N. & Goble, C. (2002), Query processing with description logic ontologies over object-wrapped databases, in International Conference on Scientific and Statistical Database Management, pp. 27–36.

Pettifer, S.; Attwood, T.; Sinnott, J.; Vass, N. & Corpas, M. (2002), UTOPIA: User-friendly Tools for OPerating Informatics Applications, in All Hands Meeting.

Smith, J.; Gounaris, A.; Watson, P.; Paton, N.; Fernandes, A. & Sakellariou, R. (2002), Distributed Query Processing on the Grid, in Grid Computing, Springer Berlin / Heidelberg, , pp. 279–290.

Stevens, R.; Goble, C.; Horrocks, I. & Bechhofer, S. (2002), Building a bioinformatics ontology using OIL, Information Technology in Biomedicine, IEEE Transactions on 6(2), 135–141.

Stevens, R.; Goble, C.; Horrocks, I. & Bechhofer, S. (2002), OILing the way to machine understandable bioinformatics resources, Information Technology in Biomedicine, IEEE Transactions on 6(2), 129-134.